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Research
interests: Computational Biology and Computational Physics
Complex Dynamical Systems Analysis
o
Analysis of Dynamical
networks: characterization, synchronization and control of spatiotemporal
dynamics on different topological networks with applications to biological
systems
o
Air-transport networks
with applications to infectious disease transmission
Systems Biology: Graph-based Analysis of Biological Networks
o
Analysis of Protein Contact Networks
- Identifying tandem structural repeats
- Domain identification
- Identifying critical residues
o
Analysis of Metabolic networks
Protein Sequence Analysis: Pattern recognition, Developing Algorithms and Specialized
Databases:
o
Identifying Peptide Periodic Repeats in Protein Sequences
o
Web-based Tool: PEPPER http://bioinf.iiit.net/PEPPER/
o
Web-based Database: DRiPS http://bioinf.iiit.ac.in/PEPPER/PTRDB_new/
o
Computation analysis of protein conformational changes
Genome Analysis: Pattern recognition, Comparative genomics, Data mining, Developing
Algorithms and Specialized Databases:
o
An Integrated Data Mining Tool for Function Analysis of SNPs:
ComPreSNPdb (In collaboration with CCMB, Hyderabad)
o
Identifying Genomic Islands and Pathogenicity Islands (IGIPT): http://bioinf.iiit.ac.in/IGIPT/
o
Development of Comprehensive Gene Database - CHGD (In
collaboration with CCMB, Hyderabad)
Funded Projects:
Identification of
Critical Residues in Protein Folds Using Graph Theoretic Approaches - PI
(Sanctioned by: CSIR, India, April
2011)
Computational Core
for Plant Metabolomics
- one of the Co-PI from IIIT
(Sanctioned
by: DBT, India, Oct 2011)
Pathosystems
Biology-Computational Analysis of Rice-Pathogen Interaction Networks - Co-Investigator from IIIT
(Submitted to: ICAR, India, April
2011)
Identification and analysis
of protein folds using graph theoretic approaches - one of the PIs
(Submitted to DST)
Analysis of protein
contact networks: Implications for protein stability - one of the PIs
(Sanctioned by: IBM, January 2009
- 2011)